Applying for an airport transit visa in Estonia
The Netherlands embassy in Tallinn doesn’t issue visa.
Estonia is part of the Schengen area. Therefore, citizens of Estonia or persons with a valid Schengen visa or a residence permit for Estonia do not need to apply for a short stay visa for the Netherlands, another Schengen country or the Caribbean part of the Netherlands.
In case you do need a visa, you can submit your application at the Netherlands embassy in Helsinki (Finland).